Gee, John. "Abracadabra, Isaac and Jacob." Review of Books on the Book of Mormon 7, no. 1 (1995): 19-84.

Gee, John. "Abraham and Idrimi." Journal of the Book of Mormon and Other Restoration Scripture 22, no. 1 (2013): 34-39.

Ludlow, Jared W.. "Abraham's Vision of the Heavens." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 57-73. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Gee, John. The Ancient Owners of the Joseph Smith Papyri. Provo, UT: Foundation for Ancient Research and Mormon Studies, 1999.

Gee, John. "The Ancient Owners of the Papyri." In A Guide to the Joseph Smith Papyri, 14-17. Provo, UT: Foundation for Ancient Research and Mormon Studies, 2000.

Gee, John, William J. Hamblin, and Daniel C. Peterson. ""And I Saw the Stars": The Book of Abraham and Ancient Geocentric Astronomy." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 1-16. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Gee, John, William J. Hamblin, and Daniel C. Peterson. ""And I Saw the Stars": The Book of Abraham and Ancient Geocentric Astronomy." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 1-16. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Gee, John. "Another Note on the Three Days of Darkness." In Pressing Forward with the Book of Mormon: The FARMS Updates of the 1990s, edited by John W. Welch and Melvin J. Thorne, 219-227. Provo, UT: FARMS, 1999.

"Appendix A: Excerpts from The Theban Cache and Other Egyptian Texts." In Traditions about the Early Life of Abraham, edited by John A. Tvedtnes, Brian M. Hauglid and John Gee, 495-609. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2001.

"Appendix B: The Sufi Philosophers and Kolob." In Traditions about the Early Life of Abraham, edited by John A. Tvedtnes, Brian M. Hauglid and John Gee, 511. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2001.

"Appendix C: MS Huntington 388." In Traditions about the Early Life of Abraham, edited by John A. Tvedtnes, Brian M. Hauglid and John Gee, 513-519. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2001.

Rhodes, Michael D., and J. Ward Moody. "Astronomy and the Creation in the Book of Abraham." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 17-36. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Astronomy, Papyrus, and Covenant In Studies in the Book of Abraham, Edited by John Gee and Brian M. Hauglid. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Gee, John. "“Bird Island” Revisited, or the Book of Mormon through Pyramidal Kabbalistic Glasses." Review of Books on the Book of Mormon 7, no. 1 (1995): 219-228.

Hauglid, Brian M.. "The Book of Abraham and Muslim Tradition." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 131-146. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Gee, John. "A Book of Mormon Christology at Last." FARMS Review of Books 10, no. 2 (1998): 7-8.

Tvedtnes, John A., John Gee, and Matthew Roper. "Book of Mormon Names Attested in Ancient Hebrew Inscriptions." Journal of Book of Mormon Studies 9, no. 1 (2000): 40-51, 78-79.

Gee, John. Book of Mormon Word Usage: "Seal You His" In Insights. Vol. 22. Provo, UT: Foundation for Ancient Research and Mormon Studies, 2002.

Clark, E. Douglas. "Cedars and Stars: Enduring Symbols of Cosmic Kingship in Abraham's Encounter with Pharaoh." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 37-55. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Gee, John. ""Choose the Things That Please Me": On the Selection of the Isaiah Sections in the Book of Mormon." In Isaiah in the Book of Mormon, edited by Donald W. Parry and John W. Welch, 67-91. Provo, UT: Foundation for Ancient Research and Mormon Studies, 1998.

"Christian Traditions about the Early Life of Abraham." In Traditions about the Early Life of Abraham, edited by John A. Tvedtnes, Brian M. Hauglid and John Gee, 183-287. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2001.

Gee, John. "Conclusions in Search of Evidence." Interpreter: A Journal of Latter-day Saint Faith and Scholarship 34 (2020): 161-178.

Gee, John. "On Corrupting the Youth." The FARMS Review 22, no. 2 (2010): 195-228.

Gee, John. "The Corruption of Scripture in Early Christianity." In Early Christians in Disarray: Contemporary LDS Perspectives on the Christian Apostasy, edited by Noel B. Reynolds, 163-204. Provo, UT: Foundation for Ancient Research and Mormon Studies, 2005.

Draper, Richard D.. "The Creation of Humankind, An Allegory?: A Note on Abraham 5:7, 14-16." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 75-82. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Gee, John. The Crocodile God of Pharaoh in Mesopotamia In Insights. Vol. 108. Foundation for Ancient Research and Mormon Studies, 1996.

Gee, John. "Daniel H. Ludlow, ed., The Encyclopedia of Mormonism." Review of Books on the Book of Mormon 5, no. 1 (1993): 172-182.

Gee, John. "A Different Way of Seeing the Hand of the Lord." Religious Educator: Perspectives on the Restored Gospel 16, no. 2 (2015): 11-127.

"Earliest Traditions about the Early Life of Abraham." In Traditions about the Early Life of Abraham, edited by John A. Tvedtnes, Brian M. Hauglid and John Gee, 1-31. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2001.

Tvedtnes, John A., and Brian M. Hauglid. "Editors' Introduction." In Traditions about the Early Life of Abraham, edited by John A. Tvedtnes, Brian M. Hauglid and John Gee, xvi–xxxviii. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2001.

Peterson, Daniel C., and John Gee. "Editor's Introduction: Through a Glass, Darkly." FARMS Review of Books 9, no. 2 (1997): v-xxix.

Muhlestein, Kerry M., and John Gee. "An Egyptian Context for the Sacrifice of Abraham." Journal of the Book of Mormon and Other Restoration Scripture 20, no. 2 (2011): 70-77.

Gee, John. "Egyptian Society during the Twenty-sixth Dynasty." In Glimpses of Lehi's Jerusalem, edited by John W. Welch, David Rolph Seely and Jo Ann H. Seely, 277-298. Provo, UT: Foundation for Ancient Research And Mormon Studies, 2004.

Gee, John. "Epigraphic Considerations on Janne Sjodahl’s Experiment with Nephite Writing." Journal of Book of Mormon Studies 10, no. 1 (2001): 25, 79.

Gee, John. "Eyewitness, Hearsay, and Physical Evidence of the Joseph Smith Papyri." In The Disciple as Witness: Essays on Latter-day Saint History and Doctrine in Honor of Richard Lloyd Anderson, edited by Stephen D. Ricks, Donald W. Parry and Andrew H. Hedges, 175-217. Provo, UT: Foundation for Ancient Research and Mormon Studies, 2000.

Gee, John. "Facsimile 3 and Book of the Dead 125." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 95-105. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Gee, John. "Facsimile 3 and Book of the Dead 125." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 95-105. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Barney, Kevin L.. "The Facsimiles and Semitic Adaptation of Existing Sources." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 107-130. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Gee, John. "The Facsimiles of the Book of Abraham." In A Guide to the Joseph Smith Papyri, 32-41. Provo, UT: Foundation for Ancient Research and Mormon Studies, 2000.

Gee, John. "Fantasy and Reality in the Translation of the Book of Abraham." Interpreter: A Journal of Latter-day Saint Faith and Scholarship 42 (2021): 127-170.

Gee, John. "Formulas and Faith." Journal of the Book of Mormon and Other Restoration Scripture 21, no. 1 (2012): 60-65.

Gee, John. "Four Idolatrous Gods in the Book of Abraham." Interpreter: A Journal of Latter-day Saint Faith and Scholarship 38 (2020): 133-152.

Gee, John. "Four Suggestions on the Origin of the Name Nephi." In Pressing Forward with the Book of Mormon: The FARMS Updates of the 1990s, edited by John W. Welch and Melvin J. Thorne, 1-5. Provo, UT: FARMS, 1999.

Gee, John. "Further Reading." In A Guide to the Joseph Smith Papyri, 46-49. Provo, UT: Foundation for Ancient Research and Mormon Studies, 2000.

Gee, John. "Glossary of Names." In A Guide to the Joseph Smith Papyri, 50-59. Provo, UT: Foundation for Ancient Research and Mormon Studies, 2000.

Gee, John. "Glossary of Terms." In A Guide to the Joseph Smith Papyri, 60-64. Provo, UT: Foundation for Ancient Research and Mormon Studies, 2000.

Gee, John. "The Grace of Christ." FARMS Review 22, no. 1 (2010): 247-259.

Gee, John, and Daniel C. Peterson. "Graft and Corruption: On Olives and Olive Culture in the Pre-Modern Mediterranean." In The Allegory of the Olive Tree: The Olive, the Bible, and Jacob 5, edited by Stephen D. Ricks and John W. Welch, 186-247. Provo, UT/Salt Lake City: Foundation for Ancient Research and Mormon Studies/Deseret Book, 1994.

Gee, John. A Guide to the Joseph Smith Papyri. Provo, UT: Foundation for Ancient Research and Mormon Studies, 2000.

Gee, John. "The Hagiography of Doubting Thomas." FARMS Review of Books 10, no. 2 (1998): 158-183.

Gee, John. "Has Olishem Been Discovered?" Journal of the Book of Mormon and Other Restoration Scripture 22, no. 2 (2013): 104-107.

Gee, John. "Historical Overview." In A Guide to the Joseph Smith Papyri, 1-13. Provo, UT: Foundation for Ancient Research and Mormon Studies, 2000.

Gee, John. A History of the Joseph Smith Papyri and Book of Abraham. Provo, UT: Foundation for Ancient Research and Mormon Studies, 1999.

Gee, John. "How Not to Read Isaiah." Interpreter: A Journal of Latter-day Saint Faith and Scholarship 37 (2020): 29-40.

Gee, John, and Matthew Roper. ""I Did Liken All Scriptures Unto Us": Early Nephite Understandings of Isaiah and Implications for "Others" in the Land." In The Fulness of the Gospel: Foundational Teachings from the Book of Mormon, edited by Camille Fronk Olson, Brian M. Hauglid, Patty Smith and Thomas A. Wayment, 51-65. Provo, UT: Religious Studies Center, 2003.

"Illustrations." In Traditions about the Early Life of Abraham, edited by John A. Tvedtnes, Brian M. Hauglid and John Gee, 521-535. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2001.

Gee, John. "The Implications of Some Standard Assumptions of New Testament Scholars: Responding to a Modern Anti-Christ." Interpreter: A Journal of Latter-day Saint Faith and Scholarship 46 (2021): 15-32.

"Index A: Unique Elements of the Book of Abraham Supported by Extrabiblical Traditions." In Traditions about the Early Life of Abraham, edited by John A. Tvedtnes, Brian M. Hauglid and John Gee, 537-547. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2001.

"Index B: Citations." In Traditions about the Early Life of Abraham, edited by John A. Tvedtnes, Brian M. Hauglid and John Gee, 549-553. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2001.

"Index C: Subject." In Traditions about the Early Life of Abraham, edited by John A. Tvedtnes, Brian M. Hauglid and John Gee, 555-562. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2001.

Millet, Robert L., Gary Lee Walker, Jerry C. Giles, Gerald Hansen, Jr., Andrew C. Skinner, J. Philip Schaelling, Daniel C. Peterson, Merril C. Oaks, Tad R. Callister, John Gee et al. Jesus Christ In Encyclopedia of Mormonism, Edited by Daniel H. Ludlow. Vol. 2. New York: Macmillan, 1992.

"Jewish Traditions about the Early Life of Abraham." In Traditions about the Early Life of Abraham, edited by John A. Tvedtnes, Brian M. Hauglid and John Gee, 33-180. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2001.

Gee, John. "The Joseph Smith Papers Project Stumbles." Interpreter: A Journal of Latter-day Saint Faith and Scholarship 33 (2019): 175-186.

Gee, John. "The Keeper of the Gate." In The Temple in Time and Eternity, edited by Donald W. Parry and Stephen D. Ricks, 233-273. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 1999.

Gee, John. "La Trahison des Clercs: On the Language and Translation of the Book of Mormon." Review of Books on the Book of Mormon 6, no. 1 (1994): 51-120.

Gee, John. "Limhi in the Library." Journal of Book of Mormon Studies 1, no. 1 (1992): 54-66.

Gee, John. "A Method for Studying the Facsimiles." The FARMS Review 19, no. 1 (2007): 347-353.

"Muslim Traditions about the Early Life of Abraham." In Traditions about the Early Life of Abraham, edited by John A. Tvedtnes, Brian M. Hauglid and John Gee, 289-463. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2001.

Gee, John. "New Light on the Joseph Smith Papyri." The FARMS Review 19, no. 2 (2007): 245-259.

Gee, John. "Notes and Communications - A Note on the Name Nephi." Journal of Book of Mormon Studies 1, no. 1 (1992): 189-191.

Gee, John. "Notes and Communications: Another Note on the Three Days of Darkness." Journal of Book of Mormon Studies 6, no. 2 (1997): 235-244.

Gee, John. "Notes and Communications: New and Old Light on Shawabtis from Mesoamerica." Journal of Book of Mormon Studies 6, no. 1 (1997): 64-69.

Gee, John. "Notes and Communications: Two Notes on Egyptian Script." Journal of Book of Mormon Studies 5, no. 1 (1996): 162-176.

Gee, John. Notes on the Sons of Horus. Provo, UT: FARMS, 1991.

Gee, John. "“An Obstacle to Deeper Understanding”." FARMS Review of Books 12, no. 2 (2000): 185-224.

Gee, John. "The Old Testament as Reliable History." The FARMS Review 18, no. 1 (2006): 425-430.

Gee, John. "One Side of a Nonexistent Conversation." The FARMS Review 15, no. 1 (2003): 81-85.

"Other Traditions about the Early Life of Abraham." In Traditions about the Early Life of Abraham, edited by John A. Tvedtnes, Brian M. Hauglid and John Gee, 465-489. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2001.

Gee, John. "Prolegomena to a Study of the Egyptian Alphabet Documents in the Joseph Smith Papers." Interpreter: A Journal of Latter-day Saint Faith and Scholarship 42 (2021): 77-98.

Lane, Jennifer C.. "The Redemption of Abraham." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 167-174. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Gee, John. "Robert L. Millet, By Grace Are We Saved." Review of Books on the Book of Mormon 2, no. 1 (1990): 100-106.

Gee, John. "The Role of the Book of Abraham in Latter-day Saint Scripture." In A Guide to the Joseph Smith Papyri, 42-45. Provo, UT: Foundation for Ancient Research and Mormon Studies, 2000.

Gee, John. The Role of the Book of Abraham in the Restoration. Provo, UT: Foundation for Ancient Research and Mormon Studies, 1997.

Hovorka, Janet. "Sarah and Hagar: Ancient Women of the Abrahamic Covenant." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 147-166. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Gee, John. "A Seething Pot in the North: International Affairs Leading Up to Lehi's Day." In Glimpses of Lehi's Jerusalem, edited by John W. Welch, David Rolph Seely and Jo Ann H. Seely, 543-560. Provo, UT: Foundation for Ancient Research and Mormon Studies, 2004.

Gee, John. "Selling Our Birthright for a Mess of Pottage: The Historical Authenticity of the Book of Abraham." In 2018 FairMormon Conference. Provo, UT: FAIR, 2018.

Gee, John. "Some Notes on the Anthon Transcript." FARMS Review of Books 12, no. 1 (2000): 5-8.

Gee, John. "Some Puzzles from the Joseph Smith Papyri." The FARMS Review 20, no. 1 (2008): 113-137.

Gee, John. "Taking Stock." Interpreter: A Journal of Latter-day Saint Faith and Scholarship 34 (2020): 113-118.

Gee, John. "Telling the Story of the Joseph Smith Papyri." FARMS Review of Books 8, no. 2 (1996): 46-59.

Gee, John. "Theories to Explain the Book of Abraham." In A Guide to the Joseph Smith Papyri, 18-31. Provo, UT: Foundation for Ancient Research and Mormon Studies, 2000.

Traditions about the Early Life of Abraham In Studies in the Book of Abraham, Edited by John A. Tvedtnes, Brian M. Hauglid, John Gee and John Gee. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2001.

Traditions about the Early Life of Abraham In Studies in the Book of Abraham, Edited by John A. Tvedtnes, Brian M. Hauglid, John Gee and John Gee. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2001.

Gee, John. "A Tragedy of Errors." Review of Books on the Book of Mormon 4, no. 1 (1992): 93-119.

Gee, John. "Two Notes on Egyptian Script." In Pressing Forward with the Book of Mormon: The FARMS Updates of the 1990s, edited by John W. Welch and Melvin J. Thorne, 244-247. Provo, UT: FARMS, 1999.

Gee, John. "Verbal Punctuation in the Book of Mormon I: (And) Now." Interpreter: A Journal of Latter-day Saint Faith and Scholarship 50 (2022): 33-50.

Gee, John. "Verbal Punctuation in the Book of Mormon II — Nevertheless." Interpreter: A Journal of Latter-day Saint Faith and Scholarship 57 (2023): 195-206.

Hedges, Andrew H.. "A Wanderer in a Strange Land: Abraham in America, 1800-1850." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 175-187. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Nadig, Peter C.. ""We Beg You, Our King!": Some Reflections on the Jews in Persian and Ptolemaic Egypt." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 83-93. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Hoskisson, Paul Y., Brian M. Hauglid, and John Gee. "What’s in a Name? Irreantum." Journal of Book of Mormon Studies 11, no. 1 (2002): 90-93, 114-115.

Gee, John. "Who Was Not the Pharaoh of the Exodus." FARMS Review of Books 9, no. 1 (1997): 43-50.

Gee, John. "Wilford A. Fischer and Norma J. Fischer, A Book of Mormon Guide: A Simple Way to Teach a Friend." Review of Books on the Book of Mormon 2, no. 1 (1990): 77-85.

Gee, John. "“The Wind and the Fire to Be My Chariot”: The Anachronism that Wasn’t." Interpreter: A Journal of Latter-day Saint Faith and Scholarship 50 (2022): 299-320.

Gee, John. "The Wrong Type of Book." In Echoes and Evidences of the Book of Mormon, edited by Donald W. Parry, Daniel C. Peterson and John W. Welch, 307-329. Provo, UT: Foundation for Ancient Research and Mormon Studies, 2002.