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Science vs. Mormonism: The Dangers of Dogmatism and Sloppy Reading." The FARMS Review 18, no. 2 (2006): 1-43.
"Science Concerns & Questions." In A CES Letter Reply: Faithful Answers For Those Who Doubt. Sandy, UT: n.p., 2018.
"Some Key Ingredients for Finding and Understanding the Truth in Science and Religion." In The Book of Mormon: Second Nephi, The Doctrinal Structure, edited by Monte S. Nyman and Charles D. Tate, Jr., 341-353. Provo, UT: Religious Studies Center, Brigham Young University, 1989.
"Of Science, Scripture, and Surprise." The FARMS Review 20, no. 2 (2008): 163-214.
"Science, Pseudoscience, and Religious Belief." The FARMS Review 17, no. 1 (2005): 273-309.
"Mormon Scholars Testify: Paul Alan Cox. Mormon Scholars Testify, 2010.
The Clockmaker Returns." The FARMS Review 20, no. 1 (2008): 139-145.
"Mormon Scholars Testify: Steven F. Faux. Mormon Scholars Testify, 2010.
Mormon Scholars Testify: Richard D. Gardner. Mormon Scholars Testify, 2010.
On Corrupting the Youth." The FARMS Review 22, no. 2 (2010): 195-228.
"Mormon Scholars Testify: M. Gary Hadfield - "My Testimony, as an Academian, of God and of the Church of Jesus Christ of Latter-day Saints". Mormon Scholars Testify, 2010.
Is There a Cure for Authoritarianism in Science?" In By Study and Also By Faith, Volume 2, edited by Stephen D. Ricks and John M. Lundquist, 438-455. Vol. 2. Provo, UT/Salt Lake City: Foundation for Ancient Research and Mormon Studies/Deseret Book, 1990.
"Mormon Scholars Testify: Ron Hellings. Mormon Scholars Testify, 2010.
The Big Bang: What Does It Mean for Us?" The FARMS Review 16, no. 2 (2004): 277-312.
"Mormon Scholars Testify: Wade E. Miller - "A Believing Scientist". Mormon Scholars Testify, 2011.
Science and the Book of Mormon: Cureloms, Cumoms, Horses and More. Laguna Niguel, CA: KCT & Associates, 2009.
Introduction." In Science and the Book of Mormon: Cureloms, Cumoms, Horses and More, vi–vii. Laguna Niguel, CA: KCT & Associates, 2009.
"Authenticity of the Book of Mormon." In Science and the Book of Mormon: Cureloms, Cumoms, Horses and More, 1-4. Laguna Niguel, CA: KCT & Associates, 2009.
"Since Cumorah: New Voices from the Dust, Part XX." Improvement Era 69, no. 5 (1966): 419-420, 422, 424.
"Since Cumorah: New Voices from the Dust, Part XXI." Improvement Era 69, no. 6 (1966): 582-583.
"Mormon Scholars Testify: Dula Parkinson - "In My Hands...". Mormon Scholars Testify, 2010.
Missing the Boat to Ancient America . . . Just Plain Missing the Boat." The FARMS Review 17, no. 1 (2005): 83-106.
"Prolegomena to the DNA Articles." The FARMS Review 15, no. 2 (2003): 25-34.
"Editor's Introduction: Through a Glass, Darkly." FARMS Review of Books 9, no. 2 (1997): v-xxix.
"Mormon Scholars Testify: Darin Ragozzine. Mormon Scholars Testify, 2012.
Science and Literature Among the Nephites." Juvenile Instructor 15, no. 9 (1880): 105-106.
"The Church and Evolution: A Brief History of Official Statements." The FARMS Review 18, no. 1 (2006): 307-311.
"Creation by Evolution?" The FARMS Review 18, no. 1 (2006): 313-319.
"Mormonism and Intelligent Design." The FARMS Review 18, no. 2 (2006): 45-81.
"Mormon Scholars Testify: Brian Shirts. Mormon Scholars Testify, 2014.
Truth, the Foundation." In Gospel Doctrine: Selections from the Sermons and Writings of Joseph F. Smith, 1-12. Salt Lake City: The Deseret News, 1919.
"Mormon Scholars Testify: Gregory L. Smith. Mormon Scholars Testify, 2010.
Mormon Scholars Testify: Matt Walters. Mormon Scholars Testify, 2011.
Mormon Scholars Testify: Jeffrey C. Wynn. Mormon Scholars Testify, 2011.